Table 2 Average statistics of the K-seq results of the three assayed species
From: K-seq, an affordable, reliable, and open Klenow NGS-based genotyping technology
| Species | Dog | Wheat 6N | Tomato |
|---|---|---|---|
| Samples | 6 | 3 | 18 |
| Reads | 3–50 millions | 0.8–1.8 millions | 1.4–9 millions |
| % sequence quality > 30 average | 96.33 | 96.87 | 96.88 |
| % mapping properly average | 95.92 | 94.43 | 92.76 |
| mapping properly q > 57 average | 89.93 | 36.16 | 71.23 |
| No SNPs | 271,704 | 5047 | 262,947 |
| % call rate | 74.9 | 78 | 69.2 |
| Filtered SNPs | 20,648 | 655 | 7122 |
| Filtered SNPs % call rate | 78.7 | 77.7 | 98.1 |